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I'm not sure what you mean by "linked" to rpm. While I'm aware thatpopt was originally developed for rpm, it is a separate package used by many other projects; and while the library (supposedly) hasn't had any API breakage, surely the functionality has improved over 5+ years.
IOW, upgrading popt should have nothing to do with Cygwin's version of rpm, although understandably you would want to test that first.
-- Chuck
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