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My only concern is that update-alternatives in any incarnation might cause confusion for cygwin users, especially for something like /bin/sh, since it, AFAIK, relies on symlinks. That means that /bin/sh won't be runnable from the Windows command prompt.
I don't know any way around this other than to make actual copies of the file or maybe make hard links where appropriate. Do any of the proposed packages deal use copies or hard links already?
-- Chuck
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